| Name | City | Management type |
|---|---|---|
| Ballico Elementary | Ballico | Public |
| Bryant Middle | Dos Palos | Public |
| Cesar E. Chavez Middle | Planada | Public |
| Gustine Middle | Gustine | Public |
| Herbert H. Cruickshank Middle | Merced | Public |
| Herbert Hoover Middle | Merced | Public |
| Hilmar Middle | Hilmar | Public |
| Livingston Middle | Livingston | Public |
| Los Banos Junior High | Los Banos | Public |
| Mitchell Intermediate | Atwater | Public |
| Rudolph Rivera Middle | Merced | Public |
| Tenaya Middle | Merced | Public |
| Weaver Middle | Merced | Public |
| Winton Middle | Winton | Public |