| Name | City | Management type |
|---|---|---|
| Abbott Middle | San Mateo | Public |
| Alta Loma Middle | South San Francisco | Public |
| Benjamin Franklin Intermediate | Colma | Public |
| Borel Middle | San Mateo | Public |
| Bowditch Middle | Foster City | Public |
| Burlingame Intermediate | Burlingame | Public |
| Central Middle | San Carlos | Public |
| Cesar Chavez Elementary | East Palo Alto | Public |
| Corte Madera | Portola Valley | Public |
| Crocker Middle | Hillsborough | Public |
| Fernando Rivera Intermediate | Daly City | Public |
| Garnet J. Robertson Intermediate | Daly City | Public |
| Hillview Middle | Menlo Park | Public |
| Ingrid B. Lacy Middle | Pacifica | Public |
| John F. Kennedy Middle | Redwood City | Public |
| La Entrada Middle | Menlo Park | Public |
| Lipman Middle | Brisbane | Public |
| Manuel F. Cunha Intermediate | Half Moon Bay | Public |
| Mckinley Institute Of Technology | Redwood City | Public |
| Odyssey School | San Mateo | Private |
| Parkside Intermediate | San Bruno | Public |
| Parkway Heights Middle | South San Francisco | Public |
| Ralston Intermediate | Belmont | Public |
| Ronald Mcnair Academy | East Palo Alto | Public |
| The Bayside S.T.E.M. Academy | San Mateo | Public |
| Taylor Middle | Millbrae | Public |
| Thomas R. Pollicita Middle | Daly City | Public |
| Tierra Linda Middle | San Carlos | Charter |
| Westborough Middle | South San Francisco | Public |