| Name | City | Management type |
|---|---|---|
| Barbara Spratling Middle | Hughson | Public |
| Blaker-Kinser Junior High | Ceres | Public |
| Cardozo Middle | Riverbank | Public |
| Cesar Chavez Junior High | Ceres | Public |
| Creekside Middle | Patterson | Public |
| Daniel J. Savage Middle | Modesto | Public |
| Denair Middle | Denair | Public |
| Elizabeth Ustach Middle | Modesto | Public |
| Emilie J. Ross Middle | Hughson | Public |
| Evelyn Hanshaw Middle | Modesto | Public |
| Hickman Middle | Hickman | Charter |
| La Loma Junior High | Modesto | Public |
| Mae Hensley Junior High | Ceres | Public |
| Mark Twain Junior High | Modesto | Public |
| Marvin A. Dutcher Middle | Turlock | Public |
| Mountain View Middle | Turlock | Public |
| Norman N. Glick Middle | Modesto | Public |
| Oakdale Junior High | Oakdale | Public |
| Prescott Senior Elementary | Modesto | Public |
| Roosevelt Junior High | Modesto | Public |
| Salida Middle School - Vella Campus | Salida | Public |
| Somerset Middle | Modesto | Public |
| Turlock Junior High | Turlock | Public |
| Waterford Middle | Waterford | Public |
| Yolo Junior High | Newman | Public |