| Name | City | Management type |
|---|---|---|
| Aspire Vanguard College Preparatory Academy | Empire | Charter |
| Big Valley Christian | Modesto | Private |
| Brethren Heritage School | Modesto | Private |
| Central Valley Christian Academy | Ceres | Private |
| Connecting Waters Charter | Waterford | Charter |
| Denair Charter Academy | Denair | Charter |
| Heritage Christian | Modesto | Private |
| New Harvest Christian | Modesto | Private |
| Providence Christian Academy | Denair | Private |
| Reyn Franca | Denair | Private |
| Reyn Franca Annex | Turlock | Private |
| Sacred Heart Elementary | Turlock | Private |
| Sierra View Christian | Modesto | Private |
| St. Thomas Aquinas Academy | Riverbank | Private |
| Whitmore Charter School Of Personalized Learning | Ceres | Charter |
| Ecademy Charter At Crane | Turlock | Charter |