| Name | City | Management type |
|---|---|---|
| Adaline E. Kent Middle | Kentfield | Public |
| Del Mar Middle | Tiburon | Public |
| Hall Middle | Larkspur | Public |
| James B. Davidson Middle | San Rafael | Public |
| Martin Luther King, Jr., Academy | Marin City | Public |
| Mill Valley Middle | Mill Valley | Public |
| Miller Creek Middle | San Rafael | Public |
| Real School Llc | Mill Valley | Private |
| San Jose Intermediate | Novato | Public |
| Sinaloa Middle | Novato | Public |
| White Hill Middle | Fairfax | Public |