| Name | City | Management type |
|---|---|---|
| Aptos Middle | San Francisco | Public |
| Buena Vista/ Horace Mann K-8 | San Francisco | Public |
| De Marillac Academy | San Francisco | Private |
| Denman (James) Middle | San Francisco | Public |
| Everett Middle | San Francisco | Public |
| Francisco Middle | San Francisco | Public |
| Gateway Middle | San Francisco | Charter |
| Giannini (A.P.) Middle | San Francisco | Public |
| Hoover (Herbert) Middle | San Francisco | Public |
| Kipp Bayview Academy | San Francisco | Charter |
| Kipp San Francisco Bay Academy | San Francisco | Charter |
| King Jr. (Martin Luther) Academic Middle | San Francisco | Public |
| Lick (James) Middle | San Francisco | Public |
| Marina Middle | San Francisco | Public |
| Presidio Middle | San Francisco | Public |
| Roosevelt Middle | San Francisco | Public |
| Visitacion Valley Middle | San Francisco | Public |