| Name | City | Management type |
|---|---|---|
| Aspire Benjamin Holt College Preparatory Academy | Stockton | Charter |
| Christa Mcauliffe Middle | Stockton | Public |
| Delta Sierra Middle | Stockton | Public |
| Discovery Charter | Tracy | Charter |
| Earle E. Williams Middle | Tracy | Public |
| El Portal Middle | Escalon | Public |
| Jefferson | Tracy | Public |
| Lodi Middle | Lodi | Public |
| Millswood Middle | Lodi | Public |
| Monte Vista Middle | Tracy | Public |
| Morada Middle | Stockton | Public |
| Sierra Middle | Stockton | Public |
| Stockton Intermediate | Stockton | Public |
| Vineyard Christian Middle School | Lodi | Private |