| Name | City | Grade range |
|---|---|---|
| Arcata Christian | Arcata | elementary |
| Fortuna Junior Academy | Fortuna | elementary |
| Gospel Outreach School | Eureka | K-12 |
| Humboldt Bay Christian | Bayside | elementary |
| Koinonia Academy | Eureka | other |
| Mistwood Center For Education | Bayside | other |
| Moore Academy | Ferndale | K-12 |
| New Life Christian School | Fortuna | K-12 |
| Pacific Coast Montessori | McKinleyville | None |
| Redwood Christian | Eureka | elementary |
| Salmon Creek Community | Miranda | elementary |
| School Of The Rock | Mckinleyville | None |
| St. Bernard's Catholic School | Eureka | K-12 |
| St. Mary's Elementary | Arcata | elementary |
| Willow Creek Christian School | Willow Creek | K-12 |