| Name | City | Grade range |
|---|---|---|
| Accelerated Achievement Academy | Hollister | elementary |
| Anzar High | San Juan Bautista | high |
| Aromas | Aromas | elementary |
| Bitterwater-Tully Elementary | King City | elementary |
| Calaveras Elementary | Hollister | elementary |
| Cerra Vista Elementary | Hollister | elementary |
| Cienega Elementary | Hollister | elementary |
| Gabilan Hills | Hollister | elementary |
| Hollister Dual Language Academy | Hollister | elementary |
| Jefferson Elementary | Paicines | elementary |
| Ladd Lane Elementary | Hollister | elementary |
| Maze Middle | Hollister | middle |
| Panoche Elementary | Paicines | elementary |
| R. O. Hardin Elementary | Hollister | elementary |
| Rancho San Justo | Hollister | middle |
| San Andreas Continuation High | Hollister | continuation |
| San Benito Adult | Hollister | adult education |
| San Benito County Juvenile Hall/Community | Hollister | juvenile hall |
| San Benito County Opportunity | Hollister | opportunity |
| San Benito High | Hollister | high |
| San Juan | San Juan Bautista | elementary |
| Southside Elementary | Hollister | elementary |
| Spring Grove Elementary | Hollister | elementary |
| Sunnyslope Elementary | Hollister | elementary |
| Tres Pinos Elementary | Tres Pinos | elementary |
| Willow Grove Elementary | Paicines | elementary |